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[[Category:Sednterp]] [[Category:Table of Contents]]
 
[[Category:Sednterp]] [[Category:Table of Contents]]
'''I.  Introduction.''' [[http://bitcwiki/SednterpPDFHelpDocs/SednterpHelpPDFs/Introduction.pdf  Download Introduction PDF]]
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Click here to download a PDF of every page of the this Wiki [[File:Pdfdownload.png‎|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:Sednterp&action=pdfbook]]
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'''I.  Introduction.''' [[File:Pdfdownload.png‎|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:Introduction&action=pdfbook]]
  
 
'''II.  [[Downloads]].'''  
 
'''II.  [[Downloads]].'''  
  
'''III.  [[Bug Reports]].'''  
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'''III. [http://sednterp.unh.edu Sednterp Web]'''  [[File:Pdfdownload.png‎|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:Sednterp%20Web&action=pdfbook]]
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:'''A. [[Introduction to Sednterp Web]]'''
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:'''B. [[Differences Desktop and Web version of Sednterp]]'''
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::1. [[Save and Load XML files Sednterp Web]]
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'''IV. [[Sednterp User Modules]]''' [[File:Pdfdownload.png‎|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:Modules&action=pdfbook]]
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'''V.  [[Bug Reports]].'''  
  
'''A.  [[Simple Step Through]].'''
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:'''A.  [[Simple Step Through]].'''
  
'''B.  [[Overview]].'''
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:'''B.  [[Overview]].'''
  
1.  [[General Information on Sednterp]].
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::1.  [[General Information on Sednterp]].
  
2.  [[General Glossary]].
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::2.  [[General Glossary]].
  
3.  [[Table of symbols]] Used.
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::3.  [[Table of symbols]] Used.
  
'''C.  Features of Sednterp Program.'''
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:'''C.  Features of Sednterp Program.'''
  
1.  [[List of Parameters for Input]].
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::1.  [[List of Parameters for Input]].
  
2.  [[List of Interpolations Available]].
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::2.  [[List of Interpolations Available]].
  
3.  [[List of Results]].
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::3.  [[List of Results]].
  
4.  [[List of Graphs]].
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::4.  [[List of Graphs]].
  
5.  [[List of Standard File Endings]].
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:'''D.  [[Development and Distribution of Sednterp]].'''
  
'''D.  [[Files Necessary to Run Sednterp]].'''
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:'''E.  [[Who to Contact for Information and Feedback]].'''
  
'''E.  [[Development and Distribution of Sednterp]].'''
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:'''F.  [[Acknowledgments]].'''
  
'''F.  [[Who to Contact for Information and Feedback]].'''
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'''VITheory of Computer Aided Interpretation of Sedimentation Data.''' [[File:Pdfdownload.png‎|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:Theory%20of%20Computer%20Aided%20Interpretation%20of%20Sedimentation%20Data&action=pdfbook]]
  
'''G.  [[Acknowledgments]].'''
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:'''A.  [[Primary Reference]].'''
  
'''IITheory of Computer Aided Interpretation of Sedimentation Data.''' [[http://bitcwiki/SednterpPDFHelpDocs/SednterpHelpPDFs/{{Theory of Computer Aided Interpretation of Sedimentation Data.pdf}}  Download Theory of Computer Aided Interpretation of Sedimentation Data PDF]]
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:'''B[[Introduction]].'''
  
'''A[[Primary Reference]].'''
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:'''CBackground.'''
  
'''B.  [[Introduction]].'''
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::1.  [[Overview of Information Needed]].
  
'''CBackground.'''
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::2[[Sedimentation Coefficient]].
  
1.  [[Overview of Information Needed]].
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::3.  [[Reduced Apparent Molecular Weight]]:
  
2.  [[Sedimentation Coefficient]].
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::4.  [[Buffer and Solute Solution Parameters]].
  
3.  [[Reduced Apparent Molecular Weight]]:
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::5.  [[Limitations]].
  
4[[Buffer and Solute Solution Parameters]].
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:'''DCalculations Implemented in Sednterp.'''
  
5.  [[Limitations]].
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::1.  [[Molecular Weight]].
  
'''DCalculations Implemented in Sednterp.'''
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::2[[Buoyant Molecular Weight]].
  
1.  [[Molecular Weight]].
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::3.  [[Calculating v-bar estimates]].
  
2.  [[Buoyant Molecular Weight]].
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::4.  [[Calculating Denatured v-bar Estimates]].
  
3[[Calculating v-bar estimates]].
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::5.  Calculating the Density of the Buffer.
  
4.  [[Calculating Denatured v-bar Estimates]].
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:::a.  [[Calculating Density Increments]].
  
5. Calculating the Density of the Buffer.
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::::1) Buffer components.
  
a. [[Calculating Density Increments]].
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::::2) Isotopes of water.
  
1) Buffer components.
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:::b. [[Calculating the Density Temperature Correction]].
  
2) Isotopes of water.
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::6. [[Calculating Viscosity]].
  
b.  [[Calculating the Density Temperature Correction]].
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::7.  [[Converting s to s-20-w]].
  
6.  [[Calculating Viscosity]].
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::8.  [[Calculating the Equivalent Radius]].
  
7[[Converting s to s-20-w]].
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::9Estimation of Protein Hydration.
  
8.  [[Calculating the Equivalent Radius]].
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:::a.  [[Limitations on Estimation of Hydration and Asymmetry]].
  
9Estimation of Protein Hydration.
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:::b[[Calculating Maximum Hydration]].
  
a.  [[Limitations on Estimation of Hydration and Asymmetry]].
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:::c.  [[Estimating Hydration]].
  
b. [[Calculating Maximum Hydration]].
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:::d. [[Calculating Hydration from Asymmetry Estimates]].
  
c[[Estimating Hydration]].
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::10Estimation of Protein Asymmetry.
  
d. [[Calculating Hydration from Asymmetry Estimates]].
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:::a.   [[Calculating Ellipsoid Asymmetry]].
  
10. Estimation of Protein Asymmetry.
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:::b.   [[Calculating Cylindrical Asymmetry]].  
  
a.   [[Calculating Ellipsoid Asymmetry]].
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::11. [[Calculating the Stokes Radius]]
  
b.  [[Calculating Cylindrical Asymmetry]].
 
  
11. [[Calculating the Stokes Radius]]
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:'''E. [[References]]'''  [[File:Pdfdownload.png‎|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:References&action=pdfbook]]
  
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'''VII.  Sednterp Program Control and Screens.'''  [[File:Pdfdownload.png‎|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:Sednterp%20Program%20Control%20and%20Screens&action=pdfbook]]
  
'''E.  [[References]]'''
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:'''A.  [[Overview of Sednterp Screens]].'''
  
'''IIISednterp Program Control and Screens.'''
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:'''B[[Programming Strategy]].'''
  
'''A.  [[Overview of Sednterp Screens]].'''
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::1.  [[Sednterp Uses Default Values]].
  
'''B.  [[Programming Strategy]].'''
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::2.  [[The User Controls Program Information and Flow]].
  
1.  [[Sednterp Uses Default Values]].
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::3.  [[A Sparse Main Form Leads to Other Program Elements]].
  
2.  [[The User Controls Program Information and Flow]].
 
  
3[[A Sparse Main Form Leads to Other Program Elements]].
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:'''CThe Main Form.'''
  
4.  [[Description of the Access Databases]]
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::1.  [[The File Menu]].
  
'''C.  The Main Form.'''
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::2[[The Results Menu]].
  
1.  [[The File Menu]].
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::3.  [[The Estimating Databases Menu]].
  
2.  [[The Results Menu]].
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::4.  [[The Experiment Section]].
  
3.  [[The Estimating Databases Menu]].
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::5.  [[The Sample Section]].
  
4.  [[The Experiment Section]].
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::6.  [[The Buffer Section]].
  
5[[The Sample Section]].
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:'''DOther Forms.'''
  
6. [[The Buffer Section]].
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::1. [[The Saving Data in Database Form]].
  
'''D. Other Forms.'''
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::2. [[The Results Form]].
  
1. [[The Saving Data in Database Form]].
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::3. [[The Sample Composition Form]].
  
2. [[The Results Form]].
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::4. [[Buffer Components Form]].
  
3. [[The Sample Composition Form]].
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:'''E.'''  [[Graphs Available]].
  
4. [[Buffer Components Form]].
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:'''F.'''  [[Schema]].
  
'''E.'''  [[Graphs Available]].
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Download this page [[File:Pdfdownload.png‎|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:Table%20of%20Contents&action=pdfbook ]]

Latest revision as of 20:27, 23 August 2012

Click here to download a PDF of every page of the this Wiki Pdfdownload.png

I. Introduction. Pdfdownload.png

II. Downloads.

III. Sednterp Web Pdfdownload.png

A. Introduction to Sednterp Web
B. Differences Desktop and Web version of Sednterp
1. Save and Load XML files Sednterp Web

IV. Sednterp User Modules Pdfdownload.png

V. Bug Reports.

A. Simple Step Through.
B. Overview.
1. General Information on Sednterp.
2. General Glossary.
3. Table of symbols Used.
C. Features of Sednterp Program.
1. List of Parameters for Input.
2. List of Interpolations Available.
3. List of Results.
4. List of Graphs.
D. Development and Distribution of Sednterp.
E. Who to Contact for Information and Feedback.
F. Acknowledgments.

VI. Theory of Computer Aided Interpretation of Sedimentation Data. Pdfdownload.png

A. Primary Reference.
B. Introduction.
C. Background.
1. Overview of Information Needed.
2. Sedimentation Coefficient.
3. Reduced Apparent Molecular Weight:
4. Buffer and Solute Solution Parameters.
5. Limitations.
D. Calculations Implemented in Sednterp.
1. Molecular Weight.
2. Buoyant Molecular Weight.
3. Calculating v-bar estimates.
4. Calculating Denatured v-bar Estimates.
5. Calculating the Density of the Buffer.
a. Calculating Density Increments.
1) Buffer components.
2) Isotopes of water.
b. Calculating the Density Temperature Correction.
6. Calculating Viscosity.
7. Converting s to s-20-w.
8. Calculating the Equivalent Radius.
9. Estimation of Protein Hydration.
a. Limitations on Estimation of Hydration and Asymmetry.
b. Calculating Maximum Hydration.
c. Estimating Hydration.
d. Calculating Hydration from Asymmetry Estimates.
10. Estimation of Protein Asymmetry.
a. Calculating Ellipsoid Asymmetry.
b. Calculating Cylindrical Asymmetry.
11. Calculating the Stokes Radius


E. References Pdfdownload.png

VII. Sednterp Program Control and Screens. Pdfdownload.png

A. Overview of Sednterp Screens.
B. Programming Strategy.
1. Sednterp Uses Default Values.
2. The User Controls Program Information and Flow.
3. A Sparse Main Form Leads to Other Program Elements.


C. The Main Form.
1. The File Menu.
2. The Results Menu.
3. The Estimating Databases Menu.
4. The Experiment Section.
5. The Sample Section.
6. The Buffer Section.
D. Other Forms.
1. The Saving Data in Database Form.
2. The Results Form.
3. The Sample Composition Form.
4. Buffer Components Form.
E. Graphs Available.
F. Schema.

Download this page Pdfdownload.png